PyHistopathology

PyHistopathology is a Python API for pre-processing Whole-Slide Images for use in a machine learning algorithm.

Features

Reading Whole-Slide Images with WSI_Scanning.readWSI()

• Input: WSI path or directory
• Output: Numpy array of WSI with data type int32

Denoising Whole-Slide Images with Denoising.denoising()

• Input: WSI Path or directory
• Output: Numpy array of WSI Image (After denoising) with dtype int32

Patch Extraction for Whole-Slide Images with Extractingpatches.extractingPatches()

• Input: WSI Path or directory
• Output: Fills up the outputpath with patches extracted from the WSI

Table of Contents

• Reading
• Usage
• Arguments
  • WSI_path
  • magnification_level
  • annotation_file
  • annonated_level
• Return Type
• Example
• Denoising
• Usage
• Arguments
  • inputsvs
  • magnification
  • filtering
• Return Type
• Extracting
• Usage
• Arguments
  • inputsvs
  • magnification
  • filtering
  • patch_extraction_creatia
  • number_of_patches
  • outputpath
  • reconstructionimagepath
• Return Type